Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01177.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1680
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1104 original size:32 final size:32

Alignment explanation


    Indices: 1063--1123  Score: 122
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1053 ATTTCTATGA

                                            
       1063 ATCTGAAGCTGATGTTTCTTTGGATGACATGG
          1 ATCTGAAGCTGATGTTTCTTTGGATGACATGG

                                         
       1095 ATCTGAAGCTGATGTTTCTTTGGATGACA
          1 ATCTGAAGCTGATGTTTCTTTGGATGACA

       1124 CAACCGCAAC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38


Consensus pattern (32 bp):   
ATCTGAAGCTGATGTTTCTTTGGATGACATGG
Done.