Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01184.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4509
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:2568 original size:17 final size:16

Alignment explanation


    Indices: 2527--2578  Score: 50
    Period size: 17  Copynumber: 3.1  Consensus size: 16

       2517 TTTTCCCTCC

                             
       2527 TTTTCTATCCTTTTTCT
          1 TTTTCT-TCCTTTTTCT

               *           * 
       2544 TTTCCTTCCTTATTTTT
          1 TTTTCTTCCTT-TTTCT

                    *        
       2561 TTTTCTTCTTTCTTTCT
          1 TTTTCTTCCTT-TTTCT

             
       2578 T
          1 T

       2579 CTGTCAAAAC


Statistics
Matches: 28,  Mismatches: 6, Indels: 2
        0.78            0.17        0.06

Matches are distributed among these distances:
  16    5  0.18
  17   23  0.82

ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73


Consensus pattern (16 bp):   
TTTTCTTCCTTTTTCT
Done.