Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00811.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4267
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.32


Found at i:1063 original size:22 final size:22

Alignment explanation


    Indices: 1038--1084  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1028 TTTTGTACAT

                                  
       1038 ATGGATTCGAAGGGCATTGTTG
          1 ATGGATTCGAAGGGCATTGTTG

                                  
       1060 ATGGATTCGAAGGGCATTGTTG
          1 ATGGATTCGAAGGGCATTGTTG

               
       1082 ATG
          1 ATG

       1085 AACAATCTGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.23, C:0.09, G:0.36, T:0.32


Consensus pattern (22 bp):   
ATGGATTCGAAGGGCATTGTTG
Done.