Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01224.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1118
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31


Found at i:1001 original size:135 final size:135

Alignment explanation


    Indices: 759--1029  Score: 533
    Period size: 135  Copynumber: 2.0  Consensus size: 135

        749 GGTTGAGTAG

                                                                             
        759 TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA
          1 TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA

                                                              *              
        824 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGT
         66 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGT

                 
        889 ACCAC
        131 ACCAC

                                                                             
        894 TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA
          1 TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA

                                                                             
        959 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGT
         66 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGT

                 
       1024 ACCAC
        131 ACCAC

             
       1029 T
          1 T

       1030 GTTACCTGAA


Statistics
Matches: 135,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 135  135  1.00

ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31


Consensus pattern (135 bp):   
TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA
TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGCTCTGGCCCAGT
ACCAC
Done.