Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01235.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2943
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35


Found at i:840 original size:6 final size:6

Alignment explanation


    Indices: 831--873  Score: 86
    Period size: 6  Copynumber: 7.2  Consensus size: 6

        821 TTATAGTTAT

                                                              
        831 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC A
          1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC A

        874 AGTCTCCAAG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.35, C:0.16, G:0.49, T:0.00


Consensus pattern (6 bp):   
AGGAGC

Done.