Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01244.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5445
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34


Found at i:2230 original size:23 final size:23

Alignment explanation


    Indices: 2204--2249  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2194 AGACATTCTC

                                   
       2204 TCTTCATCTTTCTAATTTTCATT
          1 TCTTCATCTTTCTAATTTTCATT

                                   
       2227 TCTTCATCTTTCTAATTTTCATT
          1 TCTTCATCTTTCTAATTTTCATT

       2250 GCCGAAACAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61


Consensus pattern (23 bp):   
TCTTCATCTTTCTAATTTTCATT

Found at i:3043 original size:23 final size:23

Alignment explanation


    Indices: 3017--3063  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3007 ACTTTTTTCG

                                   
       3017 GAAAAACTTTTCAGCCTTTTCCA
          1 GAAAAACTTTTCAGCCTTTTCCA

                 *                 
       3040 GAAAAGCTTTTCAGCCTTTTCCA
          1 GAAAAACTTTTCAGCCTTTTCCA

             
       3063 G
          1 G

       3064 TGTTTGTTTG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34


Consensus pattern (23 bp):   
GAAAAACTTTTCAGCCTTTTCCA
Done.