Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01249.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12441
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28


Found at i:63 original size:12 final size:12

Alignment explanation


    Indices: 46--76  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

         36 ACTCGGGGAA

                        
         46 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
         58 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                   
         70 GAGGCCG
          1 GAGGCCG

         77 AGGTAGTACT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13


Consensus pattern (12 bp):   
GAGGCCGTGGTC

Found at i:4935 original size:26 final size:26

Alignment explanation


    Indices: 4897--5032  Score: 227
    Period size: 26  Copynumber: 5.2  Consensus size: 26

       4887 TGATACAAAT

                   *                  
       4897 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                    *                 
       4923 TGATAATGTGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                    * 
       4949 TGATAATGGGTTAGGTAAATGTTTTA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                    **                
       4975 TGATAATGTATTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
       5001 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
       5027 TGATAA
          1 TGATAA

       5033 GAATTTCATG


Statistics
Matches: 101,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26  101  1.00

ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Found at i:5307 original size:12 final size:12

Alignment explanation


    Indices: 5290--5320  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       5280 ACTCGGGGAA

                        
       5290 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
       5302 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                   
       5314 GAGGCCG
          1 GAGGCCG

       5321 AGGTAGTACT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13


Consensus pattern (12 bp):   
GAGGCCGTGGTC

Found at i:10173 original size:26 final size:26

Alignment explanation


    Indices: 10135--10270  Score: 218
    Period size: 26  Copynumber: 5.2  Consensus size: 26

      10125 TGATACAAAT

                   *      *           
      10135 TGATAATAGGTTAGATAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                    *                 
      10161 TGATAATGTGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                    * 
      10187 TGATAATGGGTTAGGTAAATGTTTTA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                    **                
      10213 TGATAATGTATTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
      10239 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
      10265 TGATAA
          1 TGATAA

      10271 GAATTTCATG


Statistics
Matches: 100,  Mismatches: 10, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  26  100  1.00

ACGTcount: A:0.34, C:0.03, G:0.23, T:0.40


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.