Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01251.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3095
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32


Found at i:2368 original size:24 final size:23

Alignment explanation


    Indices: 2336--2382  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2326 AGCATTGTTT

                                    
       2336 TTTTTTTTTTGGGTACAAAAAACA
          1 TTTTTTTTTT-GGTACAAAAAACA

                                   
       2360 TTTTTTTTTTGGTACAAAAAACA
          1 TTTTTTTTTTGGTACAAAAAACA

       2383 ATCATGTCTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23   13  0.57
  24   10  0.43

ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47


Consensus pattern (23 bp):   
TTTTTTTTTTGGTACAAAAAACA
Done.