Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01253.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4827
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32


Found at i:4717 original size:14 final size:12

Alignment explanation


    Indices: 4698--4734  Score: 56
    Period size: 14  Copynumber: 2.9  Consensus size: 12

       4688 ACGTTGGTCT

                        
       4698 TTATCATTTTCA
          1 TTATCATTTTCA

                          
       4710 TCTTATCATTTTCA
          1 --TTATCATTTTCA

                       
       4724 TTATCATTTTC
          1 TTATCATTTTC

       4735 TTGTTCTGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  12   11  0.48
  14   12  0.52

ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59


Consensus pattern (12 bp):   
TTATCATTTTCA
Done.