Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01259.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2272
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33


Found at i:997 original size:21 final size:20

Alignment explanation


    Indices: 973--1021  Score: 53
    Period size: 21  Copynumber: 2.4  Consensus size: 20

        963 CTCAGATGTT

                           *  *  
        973 TTTGCTTCCTCCCTCGCTTTC
          1 TTTGCTTCCT-CCTCCCTCTC

                  *              
        994 TTTGCCCTCCTCCTCCCTCTC
          1 TTTG-CTTCCTCCTCCCTCTC

                   
       1015 TTTGCTT
          1 TTTGCTT

       1022 TCTCTAATGG


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  20    2  0.09
  21   16  0.70
  22    5  0.22

ACGTcount: A:0.00, C:0.45, G:0.08, T:0.47


Consensus pattern (20 bp):   
TTTGCTTCCTCCTCCCTCTC
Done.