Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00817.N11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1882
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:1830 original size:27 final size:28

Alignment explanation


    Indices: 1773--1832  Score: 70
    Period size: 27  Copynumber: 2.2  Consensus size: 28

       1763 CTAAGAACTT

                                   *    
       1773 TTTTAAGTTATAAATTATAAATATATTA
          1 TTTTAAGTTATAAATTATAAATAAATTA

                            *   *       
       1801 TTTT-AGTTATAAATTGT-ATTAAATTA
          1 TTTTAAGTTATAAATTATAAATAAATTA

            *     
       1827 ATTTAA
          1 TTTTAA

       1833 AATAATTATA


Statistics
Matches: 27,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  26   10  0.37
  27   13  0.48
  28    4  0.15

ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52


Consensus pattern (28 bp):   
TTTTAAGTTATAAATTATAAATAAATTA
Done.