Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01272.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6703
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30


Found at i:4411 original size:26 final size:26

Alignment explanation


    Indices: 4382--4486  Score: 162
    Period size: 26  Copynumber: 4.2  Consensus size: 26

       4372 TGGTACAAAT

                                      
       4382 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                     *          *     
       4408 TGATAATGGATTA-GTAAATATT-CA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                      
       4432 TGATAAT-GGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                     *                
       4457 TGATAATGGTTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                
       4483 TGAT
          1 TGAT

       4487 GGACATTTCA


Statistics
Matches: 71,  Mismatches: 5, Indels: 6
        0.87            0.06        0.07

Matches are distributed among these distances:
  23    4  0.06
  24   17  0.24
  25   17  0.24
  26   33  0.46

ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTCCA

Found at i:4447 original size:49 final size:52

Alignment explanation


    Indices: 4382--4486  Score: 171
    Period size: 49  Copynumber: 2.1  Consensus size: 52

       4372 TGGTACAAAT

                                                                
       4382 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTA-GTAAATATT-CA
          1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA

                                               *          *     
       4432 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA

                
       4483 TGAT
          1 TGAT

       4487 GGACATTTCA


Statistics
Matches: 51,  Mismatches: 2, Indels: 3
        0.91            0.04        0.05

Matches are distributed among these distances:
  49   30  0.59
  50   15  0.29
  51    6  0.12

ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37


Consensus pattern (52 bp):   
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Done.