Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01276.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2184
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1964 original size:6 final size:6

Alignment explanation


    Indices: 1946--1976  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1936 ATTGTGAAAT

                     *                          
       1946 GGCTGG GGATGG GGCTGG GGCTGG GGCTGG G
          1 GGCTGG GGCTGG GGCTGG GGCTGG GGCTGG G

       1977 ATATTAGCTG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.03, C:0.13, G:0.68, T:0.16


Consensus pattern (6 bp):   
GGCTGG
Done.