Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01283.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:229 original size:1 final size:1

Alignment explanation


    Indices: 223--267  Score: 63
    Period size: 1  Copynumber: 45.0  Consensus size: 1

        213 CTCTTTTCTC

                            *           *        *       
        223 AAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAGAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        268 GATAAGCTTC


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   1   38  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (1 bp):   
A

Found at i:249 original size:21 final size:21

Alignment explanation


    Indices: 223--267  Score: 81
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        213 CTCTTTTCTC

                                 
        223 AAAAAAAAAAAAAAAAGAAAA
          1 AAAAAAAAAAAAAAAAGAAAA

                   *             
        244 AAAAAAAGAAAAAAAAGAAAA
          1 AAAAAAAAAAAAAAAAGAAAA

               
        265 AAA
          1 AAA

        268 GATAAGCTTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (21 bp):   
AAAAAAAAAAAAAAAAGAAAA

Done.