Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01293.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4317
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31


Found at i:4197 original size:11 final size:10

Alignment explanation


    Indices: 4173--4210  Score: 51
    Period size: 10  Copynumber: 3.8  Consensus size: 10

       4163 GTATGCTCCC

                    * 
       4173 TTTGTTTTGT
          1 TTTGTTTTTT

                      
       4183 TTTGTTTTTT
          1 TTTGTTTTTT

                       
       4193 GTTTGTTTTTT
          1 -TTTGTTTTTT

                    
       4204 TTT-TTTT
          1 TTTGTTTT

       4211 AGTGTGTACA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
   9    4  0.15
  10   12  0.46
  11   10  0.38

ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87


Consensus pattern (10 bp):   
TTTGTTTTTT

Found at i:4209 original size:17 final size:17

Alignment explanation


    Indices: 4173--4207  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 17

       4163 GTATGCTCCC

                             
       4173 TTTGTTTTGTTTTGTTT
          1 TTTGTTTTGTTTTGTTT

                             
       4190 TTTG-TTTGTTTT-TTT
          1 TTTGTTTTGTTTTGTTT

               
       4205 TTT
          1 TTT

       4208 TTTAGTGTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    6  0.33
  16    8  0.44
  17    4  0.22

ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86


Consensus pattern (17 bp):   
TTTGTTTTGTTTTGTTT
Done.