Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01297.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3269
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28


Found at i:2150 original size:21 final size:21

Alignment explanation


    Indices: 2118--2176  Score: 64
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       2108 ACTGAACTGC

                              *   
       2118 AGAAGAAAATCCTGGAGCGCGT
          1 AGAAG-AAATCCTGGAGCACGT

            *            *    *  
       2140 TGAAGAAATCCTGAAGCATGT
          1 AGAAGAAATCCTGGAGCACGT

             *              
       2161 ACAAGAAATCCTGGAG
          1 AGAAGAAATCCTGGAG

       2177 TGTGTTAAGG


Statistics
Matches: 30,  Mismatches: 7, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  21   26  0.87
  22    4  0.13

ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17


Consensus pattern (21 bp):   
AGAAGAAATCCTGGAGCACGT

Found at i:2298 original size:12 final size:12

Alignment explanation


    Indices: 2283--2307  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2273 CACCCCTCAT

                        
       2283 TGTTGAAGCAGC
          1 TGTTGAAGCAGC

                        
       2295 TGTTGAAGCAGC
          1 TGTTGAAGCAGC

             
       2307 T
          1 T

       2308 TCCAGACCTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28


Consensus pattern (12 bp):   
TGTTGAAGCAGC
Done.