Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01305.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 394

Length: 657
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:189 original size:6 final size:6

Alignment explanation


    Indices: 178--208  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        168 TCCTCTTTTC

                                         *      
        178 TTTCAT TTTCAT TTTCAT TTTCAT TATCAT T
          1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT T

        209 GTGATGCCAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.19, C:0.16, G:0.00, T:0.65


Consensus pattern (6 bp):   
TTTCAT

Done.