Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00823.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:25 original size:8 final size:8

Alignment explanation


    Indices: 12--47  Score: 72
    Period size: 8  Copynumber: 4.5  Consensus size: 8

          2 GTCAACCAAT

                    
         12 AATTCTTC
          1 AATTCTTC

                    
         20 AATTCTTC
          1 AATTCTTC

                    
         28 AATTCTTC
          1 AATTCTTC

                    
         36 AATTCTTC
          1 AATTCTTC

                
         44 AATT
          1 AATT

         48 TGGCCCTCCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   28  1.00

ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50


Consensus pattern (8 bp):   
AATTCTTC

Found at i:452 original size:59 final size:59

Alignment explanation


    Indices: 360--480  Score: 233
    Period size: 59  Copynumber: 2.1  Consensus size: 59

        350 TGGTGATAAG

                                                                       
        360 AAGGTTGTGATCTCTGCTCCAAGCAAATGTTTGTAGTGGGTGTAAACGAGAAGGATTAC
          1 AAGGTTGTGATCTCTGCTCCAAGCAAATGTTTGTAGTGGGTGTAAACGAGAAGGATTAC

                                                       *               
        419 AAGGTTGTGATCTCTGCTCCAAGCAAATGTTTGTAGTGGGTGTGAACGAGAAGGATTAC
          1 AAGGTTGTGATCTCTGCTCCAAGCAAATGTTTGTAGTGGGTGTAAACGAGAAGGATTAC

               
        478 AAG
          1 AAG

        481 CCAGAGCTCG


Statistics
Matches: 61,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  59   61  1.00

ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28


Consensus pattern (59 bp):   
AAGGTTGTGATCTCTGCTCCAAGCAAATGTTTGTAGTGGGTGTAAACGAGAAGGATTAC
Done.