Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01314.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2981
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:1666 original size:11 final size:11

Alignment explanation


    Indices: 1650--1683  Score: 68
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       1640 CTATGATCTA

                       
       1650 ACTTCGCTCTG
          1 ACTTCGCTCTG

                       
       1661 ACTTCGCTCTG
          1 ACTTCGCTCTG

                       
       1672 ACTTCGCTCTG
          1 ACTTCGCTCTG

             
       1683 A
          1 A

       1684 TTATTCCCCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.12, C:0.35, G:0.18, T:0.35


Consensus pattern (11 bp):   
ACTTCGCTCTG
Done.