Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01315.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2632
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40


Found at i:2283 original size:43 final size:42

Alignment explanation


    Indices: 2217--2301  Score: 116
    Period size: 43  Copynumber: 2.0  Consensus size: 42

       2207 AGTTCATTAT

                   *          *     *        *         
       2217 AAGATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACC
          1 AAGATTTACTTGATTAAGAAAATGCATTATAT-GTTTATTACC

                                        *             
       2260 AAGATTTACTTGATTAAGAAAATGCATTGTATGTTTATTACC
          1 AAGATTTACTTGATTAAGAAAATGCATTATATGTTTATTACC

       2302 TTGCAATGTG


Statistics
Matches: 37,  Mismatches: 5, Indels: 1
        0.86            0.12        0.02

Matches are distributed among these distances:
  42    9  0.24
  43   28  0.76

ACGTcount: A:0.34, C:0.11, G:0.12, T:0.44


Consensus pattern (42 bp):   
AAGATTTACTTGATTAAGAAAATGCATTATATGTTTATTACC

Found at i:2521 original size:15 final size:15

Alignment explanation


    Indices: 2501--2531  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2491 TTGGTCAAAG

                           
       2501 GAATATTCATTAGCA
          1 GAATATTCATTAGCA

                           
       2516 GAATATTCATTAGCA
          1 GAATATTCATTAGCA

             
       2531 G
          1 G

       2532 CTTAATCAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32


Consensus pattern (15 bp):   
GAATATTCATTAGCA
Done.