Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01340.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1647
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23


Found at i:1295 original size:6 final size:6

Alignment explanation


    Indices: 1286--1324  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       1276 CCCCTCAACG

                 *             *                         
       1286 GCACCG GCACCA GCACCG GCACCA GCACCA GCACCA GCA
          1 GCACCA GCACCA GCACCA GCACCA GCACCA GCACCA GCA

       1325 GTAGCACCCA


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.28, C:0.49, G:0.23, T:0.00


Consensus pattern (6 bp):   
GCACCA

Found at i:1303 original size:12 final size:12

Alignment explanation


    Indices: 1286--1324  Score: 69
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       1276 CCCCTCAACG

                        
       1286 GCACCGGCACCA
          1 GCACCGGCACCA

                        
       1298 GCACCGGCACCA
          1 GCACCGGCACCA

                 *      
       1310 GCACCAGCACCA
          1 GCACCGGCACCA

               
       1322 GCA
          1 GCA

       1325 GTAGCACCCA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   26  1.00

ACGTcount: A:0.28, C:0.49, G:0.23, T:0.00


Consensus pattern (12 bp):   
GCACCGGCACCA

Done.