Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01347.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3896
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34


Found at i:3881 original size:11 final size:11

Alignment explanation


    Indices: 3862--3891  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       3852 TGTTTGAAGC

                       
       3862 AAAAA-AAAAA
          1 AAAAAGAAAAA

                       
       3872 AAAAAGAAAAA
          1 AAAAAGAAAAA

                     
       3883 AAAAAGAAA
          1 AAAAAGAAA

       3892 GGAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    5  0.26
  11   14  0.74

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (11 bp):   
AAAAAGAAAAA

Found at i:3883 original size:15 final size:15

Alignment explanation


    Indices: 3863--3892  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3853 GTTTGAAGCA

                           
       3863 AAAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAAG

                      *    
       3878 AAAAAAAAAAGAAAG
          1 AAAAAAAAAAAAAAG

       3893 GAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (15 bp):   
AAAAAAAAAAAAAAG
Done.