Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01352.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29


Found at i:786 original size:29 final size:29

Alignment explanation


    Indices: 744--801  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        734 CGCCGTATCT

                                         
        744 GGGAAGGGAATTCGTTGGCTCCTGTCGGA
          1 GGGAAGGGAATTCGTTGGCTCCTGTCGGA

                                   *     
        773 GGGAAGGGAATTCGTTGGCTCCTTTCGGA
          1 GGGAAGGGAATTCGTTGGCTCCTGTCGGA

        802 AAAGTTGATA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.17, C:0.17, G:0.40, T:0.26


Consensus pattern (29 bp):   
GGGAAGGGAATTCGTTGGCTCCTGTCGGA
Done.