Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01353.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 262
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Found at i:162 original size:29 final size:29

Alignment explanation


    Indices: 120--177  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        110 TATCAACTTT

                                         
        120 TCCGAAAGGAGCCAACGAATTCCCTTCCC
          1 TCCGAAAGGAGCCAACGAATTCCCTTCCC

                 *                       
        149 TCCGACAGGAGCCAACGAATTCCCTTCCC
          1 TCCGAAAGGAGCCAACGAATTCCCTTCCC

        178 AGATACGGCG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.26, C:0.40, G:0.17, T:0.17


Consensus pattern (29 bp):   
TCCGAAAGGAGCCAACGAATTCCCTTCCC
Done.