Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01370.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1308
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33


Found at i:843 original size:131 final size:131

Alignment explanation


    Indices: 582--1101  Score: 922
    Period size: 131  Copynumber: 4.0  Consensus size: 131

        572 TACCTGCCTC

                                                        *                  * 
        582 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATCTTTTTTCTGCTGAAGGGAAA
          1 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTCTGCTGAAGGGACA

                                                                       *     
        647 TCACAATTTAC-TT---TGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAGCTTCC
         66 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC

             
        708 A
        131 A

                       *              *                        *             
        709 TGTTTTCCCCATCCCATCAATCAAGACGCCAATACCAACATCATTTTTTTTGTGCTGAAGGGACA
          1 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTCTGCTGAAGGGACA

                                                    * *                      
        774 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCTTTTCATTACTACTAGCTAACTTCC
         66 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC

             
        839 A
        131 A

                                                             *               
        840 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTCTCTGCTGAAGGGACA
          1 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTCTGCTGAAGGGACA

                                                                             
        905 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC
         66 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC

             
        970 A
        131 A

                                                               *             
        971 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTGTGCTGAAGGGACA
          1 TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTCTGCTGAAGGGACA

                                                                             
       1036 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC
         66 TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC

             
       1101 A
        131 A

       1102 ATTTTCACTG


Statistics
Matches: 373,  Mismatches: 16, Indels: 4
        0.95            0.04        0.01

Matches are distributed among these distances:
 127   71  0.19
 128    2  0.01
 131  300  0.80

ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32


Consensus pattern (131 bp):   
TGTTTTCCCCACCCCATCAATCAAGAGGCCAATACCAACATCATTTTTTTTCTGCTGAAGGGACA
TCACAATTTACTTTCACTGAATCTTGCGTTGGAGCCTACCATGTCATTACTACTAGCTAACTTCC
A

Done.