Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01371.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4588
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3536 original size:22 final size:21

Alignment explanation


    Indices: 3493--3536  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       3483 GGAGTAGAAG

                        *   **   
       3493 AAGAAAGGAAAAGAGAGGAAA
          1 AAGAAAGGAAAAAAGAAAAAA

                                  
       3514 AAGATAAGGAAAAAAGAAAAAA
          1 AAGA-AAGGAAAAAAGAAAAAA

             
       3536 A
          1 A

       3537 TTTTAATATT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  21    4  0.21
  22   15  0.79

ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02


Consensus pattern (21 bp):   
AAGAAAGGAAAAAAGAAAAAA
Done.