Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01378.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4043
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:88 original size:14 final size:14

Alignment explanation


    Indices: 69--95  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

         59 GGAAACTGAG

                          
         69 TATGGCAAAGAAAA
          1 TATGGCAAAGAAAA

                         
         83 TATGGCAAAGAAA
          1 TATGGCAAAGAAA

         96 TTATTTTAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15


Consensus pattern (14 bp):   
TATGGCAAAGAAAA
Done.