Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01390.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2936
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:2207 original size:24 final size:24

Alignment explanation


    Indices: 2180--2253  Score: 66
    Period size: 23  Copynumber: 3.2  Consensus size: 24

       2170 GTTGGAAGCT

                                    
       2180 TACTCTTATGTATCCGTTTACAAC
          1 TACTCTTATGTATCCGTTTACAAC

                   *      *    *   * 
       2204 TACT-TTTTGT-T-AGTTGGA-AGC
          1 TACTCTTATGTATCCGTT-TACAAC

                                     
       2225 TTACTCTTATGTATCCGTTTACAAC
          1 -TACTCTTATGTATCCGTTTACAAC

                
       2250 TACT
          1 TACT

       2254 GAATAGGAGA


Statistics
Matches: 36,  Mismatches: 8, Indels: 12
        0.64            0.14        0.21

Matches are distributed among these distances:
  21    5  0.14
  22    6  0.17
  23   10  0.28
  24   10  0.28
  25    5  0.14

ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45


Consensus pattern (24 bp):   
TACTCTTATGTATCCGTTTACAAC

Found at i:2227 original size:46 final size:46

Alignment explanation


    Indices: 2162--2253  Score: 184
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       2152 GATGAAGTTC

                                                          
       2162 TTTTGTTAGTTGGAAGCTTACTCTTATGTATCCGTTTACAACTACT
          1 TTTTGTTAGTTGGAAGCTTACTCTTATGTATCCGTTTACAACTACT

                                                          
       2208 TTTTGTTAGTTGGAAGCTTACTCTTATGTATCCGTTTACAACTACT
          1 TTTTGTTAGTTGGAAGCTTACTCTTATGTATCCGTTTACAACTACT

       2254 GAATAGGAGA


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   46  1.00

ACGTcount: A:0.22, C:0.17, G:0.15, T:0.46


Consensus pattern (46 bp):   
TTTTGTTAGTTGGAAGCTTACTCTTATGTATCCGTTTACAACTACT
Done.