Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01393.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2335
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30


Found at i:171 original size:26 final size:26

Alignment explanation


    Indices: 134--269  Score: 236
    Period size: 26  Copynumber: 5.2  Consensus size: 26

        124 TGATACAAAT

                   *               *  
        134 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        160 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                   *               *  
        186 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        212 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        238 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        264 TGATAA
          1 TGATAA

        270 GAATATCATG


Statistics
Matches: 104,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26  104  1.00

ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.