Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01394.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 390

Length: 651
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35


Found at i:627 original size:60 final size:60

Alignment explanation


    Indices: 534--651  Score: 218
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        524 ATAAGTTTAT

                                                                        
        534 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
          1 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA

                 *       *                                            
        594 TAAGTGTGTTTCAGACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAG
          1 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAG


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  60   56  1.00

ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42


Consensus pattern (60 bp):   
TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
Done.