Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01400.F14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2005
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32


Found at i:435 original size:30 final size:30

Alignment explanation


    Indices: 399--459  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        389 CTGATACATA

                                          
        399 TCTTCATTCAGCCCCTGCTGGTTTTAAATT
          1 TCTTCATTCAGCCCCTGCTGGTTTTAAATT

                                          
        429 TCTTCATTCAGCCCCTGCTGGTTTTAAATT
          1 TCTTCATTCAGCCCCTGCTGGTTTTAAATT

             
        459 T
          1 T

        460 TCTTATATGG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.16, C:0.26, G:0.13, T:0.44


Consensus pattern (30 bp):   
TCTTCATTCAGCCCCTGCTGGTTTTAAATT
Done.