Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01425.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4106
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:549 original size:36 final size:36

Alignment explanation


    Indices: 502--574  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        492 GTAAATATGT

                                                
        502 CAACTTGTTGATCTACTCGCACAGATTCAGTACGGG
          1 CAACTTGTTGATCTACTCGCACAGATTCAGTACGGG

                                                
        538 CAACTTGTTGATCTACTCGCACAGATTCAGTACGGG
          1 CAACTTGTTGATCTACTCGCACAGATTCAGTACGGG

             
        574 C
          1 C

        575 TAACAGCTCT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27


Consensus pattern (36 bp):   
CAACTTGTTGATCTACTCGCACAGATTCAGTACGGG
Done.