Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01442.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2928
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:2844 original size:44 final size:44

Alignment explanation


    Indices: 2781--2868  Score: 176
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       2771 GGAAGTAGTT

                                                        
       2781 TACAGAAATTAGGGTGGGAAACATTTATTCATCCATTTTGAGGA
          1 TACAGAAATTAGGGTGGGAAACATTTATTCATCCATTTTGAGGA

                                                        
       2825 TACAGAAATTAGGGTGGGAAACATTTATTCATCCATTTTGAGGA
          1 TACAGAAATTAGGGTGGGAAACATTTATTCATCCATTTTGAGGA

       2869 ATCTTTTGAG


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32


Consensus pattern (44 bp):   
TACAGAAATTAGGGTGGGAAACATTTATTCATCCATTTTGAGGA
Done.