Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01444.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2404
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:1498 original size:3 final size:3

Alignment explanation


    Indices: 1490--1551  Score: 124
    Period size: 3  Copynumber: 20.7  Consensus size: 3

       1480 GGAGAACTTA

                                                                           
       1490 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

                              
       1538 GAT GAT GAT GAT GA
          1 GAT GAT GAT GAT GA

       1552 AGCTCCAGAG


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   59  1.00

ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32


Consensus pattern (3 bp):   
GAT

Done.