Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00840.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2948
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34


Found at i:404 original size:13 final size:13

Alignment explanation


    Indices: 386--411  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        376 CCCGGATAAT

                         
        386 TGAATTATTGAAG
          1 TGAATTATTGAAG

                         
        399 TGAATTATTGAAG
          1 TGAATTATTGAAG

        412 ATGTGAAATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38


Consensus pattern (13 bp):   
TGAATTATTGAAG
Done.