Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01470.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5138
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:4564 original size:35 final size:35

Alignment explanation


    Indices: 4518--4588  Score: 142
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       4508 AATGTCACCT

                                               
       4518 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
          1 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA

                                               
       4553 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
          1 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA

             
       4588 T
          1 T

       4589 CAATCCTCAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30


Consensus pattern (35 bp):   
TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA

Found at i:4709 original size:24 final size:24

Alignment explanation


    Indices: 4677--4724  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       4667 CAATTAAGAG

                                    
       4677 ACCAAAACCCACCAAGAAAAATTC
          1 ACCAAAACCCACCAAGAAAAATTC

                     *              
       4701 ACCAAAACCGACCAAGAAAAATTC
          1 ACCAAAACCCACCAAGAAAAATTC

       4725 CAAACTTGGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.54, C:0.31, G:0.06, T:0.08


Consensus pattern (24 bp):   
ACCAAAACCCACCAAGAAAAATTC
Done.