Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01478.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4112
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:353 original size:4 final size:4

Alignment explanation


    Indices: 344--407  Score: 83
    Period size: 4  Copynumber: 16.0  Consensus size: 4

        334 TATCTCTGTG

                                                               *   **  
        344 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CGTA TGTA
          1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA

             *    *            
        392 CGTA CGTA CATA CATA
          1 CATA CATA CATA CATA

        408 AATATGAGAA


Statistics
Matches: 56,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   56  1.00

ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27


Consensus pattern (4 bp):   
CATA

Done.