Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01479.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5662
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:10 original size:3 final size:3

Alignment explanation


    Indices: 3--43  Score: 73
    Period size: 3  Copynumber: 13.7  Consensus size: 3

          1 AG

                          *                                       
          3 GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

         44 GCAATGTCGA


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00


Consensus pattern (3 bp):   
GAA

Done.