Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga13g01481.F13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3139
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Found at i:1408 original size:220 final size:221
Alignment explanation
Indices: 1051--1463 Score: 774
Period size: 220 Copynumber: 1.9 Consensus size: 221
1041 AAGTTCCCTT
1051 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
* *
1116 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGATAGAAGATCTTACGGTTGT
66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
*
1181 GGCC-TTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
1245 CATGAGCCCTGATGTTTGAGATGTGA
196 CATGAGCCCTGATGTTTGAGATGTGA
*
1271 AACCATGAAGCTTTATATACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
1336 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
*
1401 AGCCTTTTTTTAAAATTGATATTTCTAAGGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC
131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC
1464 TTCTAATAAG
Statistics
Matches: 187, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
220 130 0.70
221 57 0.30
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (221 bp):
AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
CATGAGCCCTGATGTTTGAGATGTGA
Done.