Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01481.F18

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5077
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:2005 original size:7 final size:7

Alignment explanation


    Indices: 1995--2023  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

       1985 CTATGTTACA

                   
       1995 TGTCAAG
          1 TGTCAAG

                   
       2002 TGTCAAG
          1 TGTCAAG

                   
       2009 TGTCAAG
          1 TGTCAAG

                   
       2016 TGTCAAG
          1 TGTCAAG

             
       2023 T
          1 T

       2024 TTGTGGTGTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31


Consensus pattern (7 bp):   
TGTCAAG

Found at i:2829 original size:220 final size:221

Alignment explanation


    Indices: 2472--2884  Score: 774
    Period size: 220  Copynumber: 1.9  Consensus size: 221

       2462 AAGTTCCCTT

                                                                             
       2472 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
          1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA

                                                          * *                
       2537 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGATAGAAGATCTTACGGTTGT
         66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT

            *                                                                
       2602 GGCC-TTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
        131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT

                                      
       2666 CATGAGCCCTGATGTTTGAGATGTGA
        196 CATGAGCCCTGATGTTTGAGATGTGA

                             *                                               
       2692 AACCATGAAGCTTTATATACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
          1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA

                                                                             
       2757 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
         66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT

                                        *                                  
       2822 AGCCTTTTTTTAAAATTGATATTTCTAAGGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC
        131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC

       2885 TTCTAATAAG


Statistics
Matches: 187,  Mismatches: 5, Indels: 1
        0.97            0.03        0.01

Matches are distributed among these distances:
 220  130  0.70
 221   57  0.30

ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Consensus pattern (221 bp):   
AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
CATGAGCCCTGATGTTTGAGATGTGA
Done.