Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01481.F19

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4187
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:2058 original size:220 final size:221

Alignment explanation


    Indices: 1701--2113  Score: 774
    Period size: 220  Copynumber: 1.9  Consensus size: 221

       1691 AAGTTCCCTT

                                                                             
       1701 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
          1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA

                                                          * *                
       1766 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGATAGAAGATCTTACGGTTGT
         66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT

            *                                                                
       1831 GGCC-TTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
        131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT

                                      
       1895 CATGAGCCCTGATGTTTGAGATGTGA
        196 CATGAGCCCTGATGTTTGAGATGTGA

                             *                                               
       1921 AACCATGAAGCTTTATATACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
          1 AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA

                                                                             
       1986 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
         66 ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT

                                        *                                  
       2051 AGCCTTTTTTTAAAATTGATATTTCTAAGGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC
        131 AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAAC

       2114 TTCTAATAAG


Statistics
Matches: 187,  Mismatches: 5, Indels: 1
        0.97            0.03        0.01

Matches are distributed among these distances:
 220  130  0.70
 221   57  0.30

ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Consensus pattern (221 bp):   
AACCATGAAGCTTTATAAACTAAGTGTAATGGTGAAATGGGCTCCTAAAGGCTTGCAAATTATCA
ATACAGAGTTCTATTTTGCATGAAAGCTTCTTAGTGAGCTCTGTGACAAAAGATCTTACGGTTGT
AGCCTTTTTTTAAAATTGATATTTCTAACGCCTCATGCGAAAATCCTACTGCAATTTGTAAACAT
CATGAGCCCTGATGTTTGAGATGTGA
Done.