Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01498.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 276
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26


Found at i:116 original size:33 final size:33

Alignment explanation


    Indices: 79--211  Score: 180
    Period size: 33  Copynumber: 4.0  Consensus size: 33

         69 TTGAACAGAA

                                   *          
         79 TGATGAAGCTGTCCC-GATAGATATTCCAATCAC
          1 TGATGAAGCTG-CCCTGATAGATGTTCCAATCAC

                      *    *                *
        112 TGATGAAGCTACCCTAATAGATGTTCCAATCAA
          1 TGATGAAGCTGCCCTGATAGATGTTCCAATCAC

                                    *        *
        145 TGATGAAGCTGCCCCTG-TAGATGGTCCAATCAT
          1 TGATGAAGCTG-CCCTGATAGATGTTCCAATCAC

                                             
        178 TGATGAAGCTGCCCTGATAGATGTTCCAATCAC
          1 TGATGAAGCTGCCCTGATAGATGTTCCAATCAC

             
        211 T
          1 T

        212 TATGTTGAGA


Statistics
Matches: 87,  Mismatches: 10, Indels: 6
        0.84            0.10        0.06

Matches are distributed among these distances:
  32    8  0.09
  33   75  0.86
  34    4  0.05

ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Consensus pattern (33 bp):   
TGATGAAGCTGCCCTGATAGATGTTCCAATCAC

Done.