Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01516.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4068
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31


Found at i:2348 original size:14 final size:14

Alignment explanation


    Indices: 2329--2356  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       2319 TTCTGTCACT

                          
       2329 TTCATACTCATTTG
          1 TTCATACTCATTTG

                          
       2343 TTCATACTCATTTG
          1 TTCATACTCATTTG

       2357 CCTCGAAATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50


Consensus pattern (14 bp):   
TTCATACTCATTTG
Done.