Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01527.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1783
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1697 original size:13 final size:13

Alignment explanation


    Indices: 1679--1708  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1669 ATTATAACAC

                         
       1679 ATTAATAATATTA
          1 ATTAATAATATTA

                   *     
       1692 ATTAATAGTATTA
          1 ATTAATAATATTA

                
       1705 ATTA
          1 ATTA

       1709 GTGAGATTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (13 bp):   
ATTAATAATATTA
Done.