Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01547.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3222
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:350 original size:23 final size:23

Alignment explanation


    Indices: 320--363  Score: 88
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        310 AATGCCTAAG

                                   
        320 AGCTTTGTTATTAGTTTGGTAAA
          1 AGCTTTGTTATTAGTTTGGTAAA

                                 
        343 AGCTTTGTTATTAGTTTGGTA
          1 AGCTTTGTTATTAGTTTGGTA

        364 TGTTACTCCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.23, C:0.05, G:0.23, T:0.50


Consensus pattern (23 bp):   
AGCTTTGTTATTAGTTTGGTAAA
Done.