Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01548.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3206
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:1595 original size:18 final size:18

Alignment explanation


    Indices: 1572--1609  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1562 TTGTAGTTCA

                              
       1572 TATCAAGTTAGAAGAATT
          1 TATCAAGTTAGAAGAATT

                              
       1590 TATCAAGTTAGAAGAATT
          1 TATCAAGTTAGAAGAATT

              
       1608 TA
          1 TA

       1610 CTTTGTTTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34


Consensus pattern (18 bp):   
TATCAAGTTAGAAGAATT
Done.