Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01557.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:1595 original size:28 final size:28

Alignment explanation


    Indices: 1563--1621  Score: 109
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1553 TGCTTTGCAA

                                *       
       1563 AACATTTGTAATGGGGAATCCTTCTGCC
          1 AACATTTGTAATGGGGAATCATTCTGCC

                                        
       1591 AACATTTGTAATGGGGAATCATTCTGCC
          1 AACATTTGTAATGGGGAATCATTCTGCC

               
       1619 AAC
          1 AAC

       1622 TTATGATAAA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   30  1.00

ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Consensus pattern (28 bp):   
AACATTTGTAATGGGGAATCATTCTGCC
Done.