Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01560.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32


Found at i:943 original size:137 final size:136

Alignment explanation


    Indices: 698--983  Score: 491
    Period size: 137  Copynumber: 2.1  Consensus size: 136

        688 GAGTAGTCTC

                                   *                                         
        698 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                               *             
        763 GTTATCTAAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACCA
         66 GTTATCTAAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
        828 CTATTA
        131 CTATTA

                                                                             
        834 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                    *                 *          *                           
        899 TGTTATCTGAATAAGGGGCTAAGGCCTAGTTTATTGTGATCTGAAAAGGGCTCTGGCCCAGTACC
         65 TGTTATCTAAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

               *   
        964 ACTGTTA
        130 ACTATTA

              **         
        971 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

        984 AGGCCAATAG


Statistics
Matches: 141,  Mismatches: 8, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 136   20  0.14
 137  121  0.86

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTAAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTATTA
Done.