Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01561.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4574
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34


Found at i:1426 original size:19 final size:19

Alignment explanation


    Indices: 1402--1440  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1392 ACCTCAATTG

                               
       1402 TTTAGTGTCTTTTTACCCT
          1 TTTAGTGTCTTTTTACCCT

                               
       1421 TTTAGTGTCTTTTTACCCT
          1 TTTAGTGTCTTTTTACCCT

             
       1440 T
          1 T

       1441 CTTTTTGCCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.10, C:0.21, G:0.10, T:0.59


Consensus pattern (19 bp):   
TTTAGTGTCTTTTTACCCT

Done.