Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01568.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:1531 original size:16 final size:16

Alignment explanation


    Indices: 1502--1539  Score: 60
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1492 TGCCATATGG

                      *     
       1502 TGTT-ATGGTTAGAAT
          1 TGTTCATGGTCAGAAT

                            
       1517 TGTTCATGGTCAGAAT
          1 TGTTCATGGTCAGAAT

                   
       1533 TGTTCAT
          1 TGTTCAT

       1540 TGTCTGCTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15    4  0.19
  16   17  0.81

ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45


Consensus pattern (16 bp):   
TGTTCATGGTCAGAAT
Done.